species:   Clros
pid:       PID2217
parent:    cro-mir-7
paralog:   
locus:     CADEHS020000012.2:1157823-1157879
matures:   ['GCCGAUUAGUAGUUGGGUCGG', 'AUCCCGUCUGCUCUCCGCAC']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000012.2:1157823-1157879

599 out of bounds
115 alignments
115 proper strand
114 stranded perfect matches

********************              ***********************
AUCCCGUCUGCUCUCCGCACGUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG
..((((.(((((.((.((.(.(((......))).).)).))..))))).))))....
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=57 c
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 c*
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=57 ma
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 ma*

AUCCCGUCUGCUCUCCGCACG------------------------------------ l=21 a=1 
-----------UCUCCGCACGUUAAGCUAGUA------------------------- l=21 a=1 
--------------CCGCACGUUAAGCUAGUAAGGGGC------------------- l=24 a=1 
-------------------CGUUAAGCUAGUAAGGGGCCG----------------- l=21 a=1 
--------------------GUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG l=37 a=1 
------------------------AGCUAGUAAGGGGC------------------- l=14 a=1 
------------------------AGCUAGUAAGGGGCCG----------------- l=16 a=1 
--------------------------CUAGUAAGGGGCCGAUUAGUAGUU------- l=24 a=1 
--------------------------CUAGUAAGGGGCCGAUUAGUAGUUGGGU--- l=28 a=1 
-----------------------------GUAAGGGGCCGAUUAGUAGUUGGGU--- l=25 a=2 
------------------------------UAAGGGGCCGAUUAGUAGU-------- l=19 a=2 
------------------------------UAAGGGGCCGAUUAGUAGUU------- l=20 a=1 
------------------------------UAAGGGGCCGAUUAGUAGUUGGGUC-- l=25 a=1 
-------------------------------AAGGGGCCGAUUAGUAGUUGGGUC-- l=24 a=1 
-----------------------------------GGCCGAUUAGUAGUUGGGU--- l=19 a=1 
-----------------------------------GGCCGAUUAGUAGUUGGGUC-- l=20 a=4 
-----------------------------------GGCCGAUUAGUAGUUGGGUCGG l=22 a=11 
------------------------------------GCCGAUUAGUAG--------- l=12 a=1 
------------------------------------GCCGAUUAGUAGUUGG----- l=16 a=2 
------------------------------------GCCGAUUAGUAGUUGGG---- l=17 a=8 
------------------------------------GCCGAUUAGUAGUUGGGUC-- l=19 a=7 
------------------------------------GCCGAUUAGUAGUUGGGUCG- l=20 a=5 
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=57 (c,ma)
------------------------------------GCCGAUUAGaAGUUGGGUCGG l=21 a=1 
-------------------------------------CCGAUUAGUAGUUGGGU--- l=17 a=1 
-------------------------------------CCGAUUAGUAGUUGGGUCGG l=20 a=1 

mb-01111
ax-1001011
ku-01
ss-101111101110
fn-111
